PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.7G168500.1.p

Common Name

PRUPE_ppa008596mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 327aa MW: 35966.8 Da PI: 6.1656

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G168500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.3e-10	51	100	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l ++ +K++Ka+iL+ +++ +k+L Prupe.7G168500.1.p 51 RKVQKADREKLRRDRLNEHFLELGNTLDPD----RPKNDKATILTDTIQMLKDL 100 5677889******************997....79**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.275	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.71E-8	51	104	No hit	No description
SuperFamily	SSF47459	3.01E-12	51	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-10	51	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.5E-8	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-7	56	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDQWNGDDFS AASAPSSAQP LLLPSSNRSH NSNSESRQRP DVETKDPIVA RKVQKADREK 60 LRRDRLNEHF LELGNTLDPD RPKNDKATIL TDTIQMLKDL TADVGKLKAE CAALTDESRE 120 LTQEKNELRE EKASLKSDIE NLNVQYQQRL RVMFPWAAMD PSVVMAPQYS YPMPVAVPPG 180 SIPMHPSLQP FPYFQTQTPA AIPNPCSTFV PYQAPANPPV EQPAPQYASV SHLSSKQDSR 240 SKSSDMQRGS NAERCDDSND VATDLELKMP GSSTQQDSSS GGRKSKQSQR KDRVVTDGSS 300 SSRYSSSQGL QDNSSNSVGD VPKSNK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007204901.1	0.0	hypothetical protein PRUPE_ppa008596mg
Swissprot	Q9LT23	2e-89	BH121_ARATH; Transcription factor bHLH121
TrEMBL	M5WH39	0.0	M5WH39_PRUPE; Uncharacterized protein
STRING	VIT_04s0023g03430.t01	1e-149	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2282	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	2e-83	bHLH family protein

Link Out ? help Back to Top
Phytozome	Prupe.7G168500.1.p
Entrez Gene	18771584